STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55722.1PFAM: NUDIX hydrolase. (180 aa)    
Predicted Functional Partners:
ABP55723.1
PFAM: Nucleotidyl transferase.
 
     0.829
ABP55724.1
PFAM: regulatory protein, AsnC/Lrp family.
       0.805
ABP55721.1
GTP diphosphokinase; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region.
       0.739
ABP52846.1
PFAM: GCN5-related N-acetyltransferase.
  
    0.722
ABP56728.1
Hypothetical protein.
  
    0.709
ABP56727.1
Hypothetical protein.
  
     0.695
ABP56774.1
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein.
  
     0.689
ABP55823.1
Hypothetical protein.
  
     0.668
ABP53798.1
Hypothetical protein.
  
     0.664
ABP56679.1
PFAM: RDD domain containing protein.
  
     0.655
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.