STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55827.1PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. (394 aa)    
Predicted Functional Partners:
ABP55828.1
PFAM: Saccharopine dehydrogenase.
  
    0.751
ABP55829.1
TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase, class II (G, H, P and S); seryl-tRNA synthetase, class IIa.
  
    0.530
ABP54230.1
Hypothetical protein.
  
     0.521
ABP56845.1
TIGRFAM: amino acid adenylation domain; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Belongs to the ATP-dependent AMP-binding enzyme family.
     
 0.485
ABP55493.1
TIGRFAM: thioester reductase domain; PFAM: GCN5-related N-acetyltransferase; beta-ketoacyl synthase; AMP-dependent synthetase and ligase; acyl transferase domain protein; NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; phosphopantetheine-binding; Male sterility C-terminal domain.
  
  
 0.484
ABP56533.1
PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.
  
  
 0.472
ABP53654.1
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.426
ABP54862.1
Hypothetical protein.
  
     0.424
ABP56409.1
Hypothetical protein.
  
     0.424
ABP54217.1
PFAM: cyclase/dehydrase.
 
    0.411
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.