STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP55979.1PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase. (710 aa)    
Predicted Functional Partners:
ABP52531.1
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase.
 
 
 
 0.826
ABP55648.1
PFAM: cell cycle protein; Belongs to the SEDS family.
  
 
 
 0.730
ABP55652.1
PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain.
 
 
 
 0.725
mltG
Aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.724
ABP56730.1
PFAM: peptidase M23B.
  
     0.697
ABP56246.1
PFAM: peptidase M23B.
  
     0.684
ABP56247.1
PFAM: peptidase M23B.
  
     0.664
mraY
Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
 
  
 0.660
ABP55980.1
Hypothetical protein.
       0.648
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.639
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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