Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABP56005.1PFAM: protein of unknown function DUF1360. (175 aa)    
Predicted Functional Partners:
ABP56006.1
Hypothetical protein.
       0.620
ABP56007.1
Hypothetical protein.
       0.619
ABP53488.1
Hypothetical protein.
  
     0.603
ABP56013.1
Hypothetical protein.
 
     0.569
ABP56155.1
PFAM: ATP-binding region, ATPase domain protein domain protein.
  
     0.558
ABP55704.1
Hypothetical protein.
  
     0.552
ABP54219.1
Hypothetical protein.
 
     0.477
ABP53654.1
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.419
ABP56008.1
Hypothetical protein.
       0.417
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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