Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABP56008.1Hypothetical protein. (122 aa)    
Predicted Functional Partners:
ABP56009.1
Hypothetical protein.
       0.836
ABP53935.1
Hypothetical protein.
  
     0.681
ABP56476.1
Hypothetical protein.
  
     0.632
ABP53800.1
PFAM: Rieske [2Fe-2S] domain protein.
  
   
 0.558
ABP56268.1
Hypothetical protein.
  
     0.550
ABP55922.1
Hypothetical protein.
  
     0.527
ABP56917.1
PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.516
ABP55946.1
Hypothetical protein.
  
     0.514
ABP56006.1
Hypothetical protein.
       0.512
ABP56007.1
Hypothetical protein.
       0.512
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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