STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56020.1PFAM: binding-protein-dependent transport systems inner membrane component. (317 aa)    
Predicted Functional Partners:
ABP56019.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 0.997
ABP56018.1
PFAM: extracellular solute-binding protein, family 1.
 
 0.994
ABP56648.1
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.978
ABP52920.1
PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 0.974
ABP54849.1
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase.
 
 0.972
ABP54024.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.893
ABP54848.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.892
ABP55420.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 
 0.890
ABP53281.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.878
ABP55697.1
PFAM: binding-protein-dependent transport systems inner membrane component.
 
 0.876
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.