STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56029.1PFAM: Roadblock/LC7 family protein. (140 aa)    
Predicted Functional Partners:
ABP56027.1
PFAM: protein of unknown function, ATP binding.
 
 
 0.990
ABP56030.1
PFAM: ATP-binding region, ATPase domain protein domain protein; Nitrate and nitrite sensing domain protein.
     0.961
ABP56028.1
PFAM: protein of unknown function DUF742.
 
   
 0.954
ABP53296.1
PFAM: protein of unknown function, ATP binding.
 
 
 0.951
ABP56302.1
PFAM: protein of unknown function, ATP binding.
 
 
 0.951
ABP56305.1
PFAM: ATP-binding region, ATPase domain protein domain protein; Nitrate and nitrite sensing domain protein.
   
 0.811
ABP53293.1
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; Nitrate and nitrite sensing domain protein.
   
 0.810
ABP53295.1
PFAM: protein of unknown function DUF742.
 
   
 0.806
ABP56303.1
PFAM: protein of unknown function DUF742.
 
   
 0.806
ABP53234.1
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein.
 
   
 0.775
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.