STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56030.1PFAM: ATP-binding region, ATPase domain protein domain protein; Nitrate and nitrite sensing domain protein. (841 aa)    
Predicted Functional Partners:
ABP56029.1
PFAM: Roadblock/LC7 family protein.
     0.961
ABP56027.1
PFAM: protein of unknown function, ATP binding.
 
     0.957
ABP56028.1
PFAM: protein of unknown function DUF742.
 
     0.950
ABP56533.1
PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein.
  
 
 0.874
ABP53294.1
PFAM: Roadblock/LC7 family protein.
     0.808
ABP56304.1
PFAM: Roadblock/LC7 family protein.
     0.805
ABP53295.1
PFAM: protein of unknown function DUF742.
 
     0.787
ABP56303.1
PFAM: protein of unknown function DUF742.
 
     0.787
ABP53235.1
PFAM: Roadblock/LC7 family protein.
  
     0.774
ABP53296.1
PFAM: protein of unknown function, ATP binding.
 
     0.772
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.