STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56190.14Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (108 aa)    
Predicted Functional Partners:
ABP56189.1
PFAM: aminotransferase, class I and II.
    
 0.941
ABP56188.1
PFAM: Prephenate dehydrogenase; 6-phosphogluconate dehydrogenase, NAD-binding.
  
    0.736
ABP56187.1
PFAM: protein of unknown function DUF541.
       0.727
ABP56186.1
Hypothetical protein.
       0.702
ABP56191.1
PFAM: GCN5-related N-acetyltransferase.
       0.652
ABP53176.1
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
  
 
 0.632
ABP56223.1
PFAM: adenylylsulfate kinase.
  
  
 0.495
ABP56185.1
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Belongs to the peptidase S8 family.
       0.456
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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