Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABP56409.1Hypothetical protein. (162 aa)    
Predicted Functional Partners:
ABP56407.1
PFAM: glycosyl transferase, family 9.
       0.746
ABP56408.1
PFAM: heat shock protein Hsp20; Belongs to the small heat shock protein (HSP20) family.
       0.746
ABP52818.1
Hypothetical protein.
  
     0.603
ABP54862.1
Hypothetical protein.
  
     0.569
ABP53654.1
PFAM: short-chain dehydrogenase/reductase SDR; KR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.505
ABP56410.1
PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding.
       0.504
ABP55725.1
Hypothetical protein.
  
     0.489
ABP55827.1
PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein.
  
     0.424
ABP53712.1
Hypothetical protein.
  
     0.409
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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