STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56443.1PFAM: BRO domain protein domain protein. (284 aa)    
Predicted Functional Partners:
ABP56444.1
Hypothetical protein.
       0.773
ABP56445.1
SMART: helix-turn-helix domain protein.
       0.573
ABP56446.1
PFAM: phage integrase family protein; Belongs to the 'phage' integrase family.
  
  
 0.571
lexA
SOS-response transcriptional repressor, LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.548
ABP56598.1
TIGRFAM: conserved hypothetical integral membrane protein.
  
     0.530
ABP56435.1
Hypothetical protein.
 
     0.496
ABP56127.1
PFAM: peptidase S24, S26A and S26B.
  
  
 0.485
ABP55564.1
PFAM: Lytic transglycosylase, catalytic.
     
 0.441
ABP56436.1
Hypothetical protein.
  
    0.425
ABP56600.1
PFAM: cobalt transport protein.
  
     0.419
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.