STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56454.1Hypothetical protein. (427 aa)    
Predicted Functional Partners:
ABP56456.1
TIGRFAM: FAD-linked oxidoreductase; PFAM: FAD linked oxidase domain protein; D-arabinono-1,4-lactone oxidase.
    0.835
ABP52508.1
PFAM: lipolytic enzyme, G-D-S-L family.
  
     0.656
ABP56452.1
TIGRFAM: DNA polymerase III, delta prime subunit; SMART: AAA ATPase.
       0.622
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.562
ABP54241.1
Trans-aconitate 2-methyltransferase; PFAM: Methyltransferase type 11; Methyltransferase type 12.
      
 0.444
ABP54930.1
PFAM: lipolytic enzyme, G-D-S-L family.
  
     0.411
ABP55881.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.