STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56600.1PFAM: cobalt transport protein. (249 aa)    
Predicted Functional Partners:
ABP56601.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.973
ABP56598.1
TIGRFAM: conserved hypothetical integral membrane protein.
 
   
 0.963
ABP56635.1
PFAM: BioY protein.
  
 0.962
ABP55875.1
PFAM: cobalt transport protein.
  
  
  0.920
ABP56827.1
PFAM: cobalt transport protein.
     
  0.900
ABP55036.1
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
 
 
 0.791
ABP56599.1
Hypothetical protein.
       0.773
ABP56602.1
Hypothetical protein.
       0.773
ABP53590.1
Cobalt ABC transporter, ATPase subunit; Part of an ABC transporter complex. Responsible for energy coupling to the transport system.
  
 
 0.763
ABP55874.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
 
 0.723
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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