STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56775.1PFAM: beta-lactamase domain protein. (275 aa)    
Predicted Functional Partners:
ABP52769.1
PFAM: NUDIX hydrolase.
     0.946
ABP56774.1
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein.
       0.895
ABP56776.1
PFAM: Endoribonuclease L-PSP.
  
    0.639
ABP54075.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 0.583
ABP54420.1
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
 0.583
ABP56772.1
PFAM: protein of unknown function RIO1; protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase.
  
    0.526
ABP56773.1
Hypothetical protein.
       0.493
ABP55273.1
PFAM: condensation domain protein.
   
 
 0.450
ABP53632.1
PFAM: beta-lactamase domain protein.
      
 0.444
ABP55550.1
PFAM: beta-lactamase domain protein.
  
     0.402
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.