STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56811.1PFAM: ABC-2 type transporter. (253 aa)    
Predicted Functional Partners:
ABP56812.1
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.968
ABP53098.1
PFAM: ABC-2 type transporter.
 
 
0.887
ABP56792.1
Hypothetical protein.
 
  
0.842
ABP53097.1
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.840
ABP52988.1
PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.834
ABP56810.1
Transcriptional regulator, MerR family; PFAM: regulatory protein, MerR.
 
     0.770
ABP56813.1
PFAM: MmgE/PrpD family protein.
       0.523
ABP56814.1
Hypothetical protein.
       0.523
ABP56807.1
Hypothetical protein.
       0.520
ABP56808.1
PFAM: protein of unknown function DUF1023.
       0.520
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.