STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56881.1PFAM: TadE family protein. (139 aa)    
Predicted Functional Partners:
ABP56886.1
Hypothetical protein.
  
  
 0.927
ABP56883.1
PFAM: type II secretion system protein.
  
  
 0.871
ABP56884.1
PFAM: type II secretion system protein.
  
  
 0.871
ABP56885.1
PFAM: type II secretion system protein E.
  
  
 0.828
ABP56880.1
PFAM: TadE family protein.
       0.819
ABP56887.1
PFAM: SAF domain.
  
    0.801
ABP56882.1
Hypothetical protein.
       0.773
ABP56888.1
Hypothetical protein.
       0.765
ABP56889.1
Hypothetical protein.
       0.742
ABP56534.1
Stage II sporulation E family protein; PFAM: GAF domain protein; ATP-binding region, ATPase domain protein domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
    0.583
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.