STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABP56917.1PFAM: CDP-alcohol phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (242 aa)    
Predicted Functional Partners:
ABP56915.1
PFAM: Nucleotidyl transferase.
       0.803
ABP56916.1
Glycerol-1-phosphate dehydrogenase (NAD(P)(+)); PFAM: iron-containing alcohol dehydrogenase; 3-dehydroquinate synthase.
     
 0.782
ABP55823.1
Hypothetical protein.
 
     0.772
ABP52728.1
PFAM: phosphoesterase, PA-phosphatase related.
 
  
 0.770
ABP52855.1
Hypothetical protein.
 
     0.767
ABP56727.1
Hypothetical protein.
  
     0.764
ABP56728.1
Hypothetical protein.
  
     0.755
ABP56774.1
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein.
 
     0.755
ABP52928.1
Hypothetical protein.
 
     0.745
ABP52686.1
Hypothetical protein.
  
     0.741
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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