Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABP56929.1Hypothetical protein. (560 aa)    
Predicted Functional Partners:
ABP56928.1
PFAM: ABC transporter related; SMART: AAA ATPase.
 
     0.950
ABP53297.1
Hypothetical protein.
  
     0.688
ABP55916.1
Hypothetical protein.
  
     0.666
ABP55349.1
PFAM: Fibronectin, type III domain protein.
  
     0.629
ABP54959.1
PFAM: regulatory protein, LuxR; Tetratricopeptide TPR_4.
  
   
 0.623
ABP54958.1
Hypothetical protein.
  
     0.579
ABP52597.1
Hypothetical protein.
  
     0.549
ABP56926.1
Hypothetical protein.
       0.546
ABP56927.1
Sigma-70, region 4 type 2; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.546
ABP56930.1
Sigma-70, region 4 type 2; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; Belongs to the sigma-70 factor family. ECF subfamily.
       0.529
Your Current Organism:
Salinispora tropica
NCBI taxonomy Id: 369723
Other names: S. tropica CNB-440, Salinispora sp. CNB-440, Salinispora tropica ATCC BAA-916, Salinispora tropica CNB-440, Salinispora tropica str. CNB-440, Salinispora tropica strain CNB-440
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