STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d1TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1. (1355 aa)    
Predicted Functional Partners:
card14
Caspase recruitment domain family, member 14.
      
 0.565
dgke
Diacylglycerol kinase.
      
 0.491
tbc1d16
TBC1 domain family, member 16.
      
0.491
arhgap17
Uncharacterized protein.
      
 0.480
LOC108239237
Rho GTPase activating protein 17b.
      
 0.480
LOC108233752
Aminopeptidase.
     
 0.422
lnpep
Leucyl/cystinyl aminopeptidase.
     
 0.422
erap2
Aminopeptidase.
     
 0.422
LOC108244358
Aminopeptidase.
     
 0.422
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.