STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
r3hcc1R3H domain and coiled-coil containing 1. (390 aa)    
Predicted Functional Partners:
svopl
SVOP-like.
      
 0.579
ap1g1
AP-1 complex subunit gamma.
      
 0.448
mocs1
Molybdenum cofactor synthesis 1.
      
 0.443
chmp7
Charged multivesicular body protein 7.
 
    
 0.425
hemk1
HemK methyltransferase family member 1.
      
 0.412
limch1
LIM and calponin homology domains 1b.
      
 0.408
sord
Sorbitol dehydrogenase.
      
 0.407
yipf3
Yip1 domain family, member 3.
      
 0.406
ddx55
RNA helicase.
      
 0.405
tmed2
Transmembrane p24 trafficking protein 2.
      
 0.404
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.