STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000000323E2F_TDP domain-containing protein. (85 aa)    
Predicted Functional Partners:
tfdp1
Transcription factor.
  
 0.988
rbl1
Retinoblastoma-like 1 (p107).
   
 0.985
rb1
Retinoblastoma 1.
   
 0.982
LOC108247541
Mothers against decapentaplegic homolog.
    
 0.952
LOC108235010
Mothers against decapentaplegic homolog.
    
 0.940
LOC108237917
Mothers against decapentaplegic homolog.
    
 0.940
smad3
Mothers against decapentaplegic homolog.
    
 0.940
e2f4
E2F transcription factor 4.
  
  
 
0.901
LOC108229746
Retinoblastoma-like 2 (p130).
   
 0.856
lin37
Lin-37 DREAM MuvB core complex component.
    
 0.824
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.