STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108245602Golgi apparatus membrane protein TVP23 homolog. (200 aa)    
Predicted Functional Partners:
LOC108245351
Protein YIPF.
   
 
 0.603
yipf1
Protein YIPF.
   
 
 0.603
yipf3
Yip1 domain family, member 3.
   
 
 0.598
ulk2
Unc-51 like autophagy activating kinase 2.
    
   0.595
ulk1
Unc-51 like autophagy activating kinase 1.
    
   0.595
LOC108247312
Unc-51 like autophagy activating kinase 1a.
    
   0.595
ulk3
Unc-51 like kinase 3; Belongs to the protein kinase superfamily.
    
   0.495
pdik1l
PDLIM1 interacting kinase 1 like; Belongs to the protein kinase superfamily.
    
   0.495
LOC108249422
Serine/threonine kinase 35; Belongs to the protein kinase superfamily.
    
   0.495
LOC108245465
Si:ch211-63o20.7; Belongs to the protein kinase superfamily.
    
   0.495
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.