STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSKMAP00000000365PAS domain-containing protein. (297 aa)    
Predicted Functional Partners:
LOC108229339
Aryl-hydrocarbon receptor nuclear translocator 2.
 
   
 0.822
LOC108230341
Cryptochrome DASH.
   
 0.817
LOC108247432
Neuronal PAS domain protein 2.
   
0.812
clock
Uncharacterized protein.
   
0.812
LOC108241552
Clock circadian regulator b.
   
0.812
LOC108250939
Cryptochrome circadian regulator 2.
   
 0.765
npas4
Neuronal PAS domain protein 4a.
    
 0.758
ENSKMAP00000013588
BHLH domain-containing protein.
    
 0.758
LOC108233302
Cryptochrome circadian regulator 1a.
   
 0.746
LOC108237298
Cryptochrome circadian regulator 5.
   
 0.717
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.