STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc6Leucine rich repeat containing 6. (359 aa)    
Predicted Functional Partners:
zmynd10
Zinc finger, MYND-type containing 10.
    
 0.731
dnah5
Dynein, axonemal, heavy chain 5.
   
 
 0.723
dnai1
Dynein, axonemal, intermediate chain 1, paralog 2.
  
 
 
 0.716
dnai2
Dynein, axonemal, intermediate chain 2b.
    
 
 0.685
dnaaf3
Dynein, axonemal, assembly factor 3 like.
      
 0.679
fkbp8
Peptidylprolyl isomerase.
   
 
 0.669
LOC108251537
Radial spoke head component 4A.
   
 
 0.660
dnah10
Dynein axonemal heavy chain 10.
   
 
 0.643
SPAG1
Sperm associated antigen 1.
    
 
 0.642
ccdc40
Coiled-coil domain containing 40.
   
 
 0.641
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.