STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108247345Kruppel-like factor 6a. (287 aa)    
Predicted Functional Partners:
RRM2
Ribonucleotide reductase regulatory subunit M2.
      
 0.679
RRM2-2
Ribonucleotide reductase regulatory subunit M2.
      
 0.679
mfsd2a
Major facilitator superfamily domain containing 2ab.
      
 0.679
mcm5
DNA helicase; Belongs to the MCM family.
    
 
 0.670
JUND
BZIP domain-containing protein.
   
 0.614
fosl2
Fos-like antigen 2.
    
 0.590
atf3
Activating transcription factor 3.
   
 0.567
LOC108234023
Plasminogen activator, urokinase a; Belongs to the peptidase S1 family.
    
 
 0.551
ENSKMAP00000011188
Jun proto-oncogene, AP-1 transcription factor subunit; Belongs to the bZIP family.
   
 0.513
LOC108228382
JunE proto-oncogene, AP-1 transcription factor subunit.
   
 0.513
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.