STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108239870Transforming, acidic coiled-coil containing protein 1. (891 aa)    
Predicted Functional Partners:
ENSKMAP00000007559
SMYLE_N domain-containing protein.
      
 0.657
Ckap5
Cytoskeleton associated protein 5.
    
 
 0.636
LOC108234062
TACC_C domain-containing protein.
  
 
 
0.574
pde4d
Phosphodiesterase.
   
  
 0.496
tacc3
Transforming, acidic coiled-coil containing protein 3.
    
 
0.459
cep120
Centrosomal protein 120.
    
 0.421
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 
 0.410
plk4
Polo-like kinase 4 (Drosophila).
   
 0.401
PLK1
Serine/threonine-protein kinase PLK.
   
 0.401
plk3
Serine/threonine-protein kinase PLK.
   
 0.401
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.