STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul4bCullin 4B; Belongs to the cullin family. (869 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
   
 0.977
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.958
dtl
Denticleless E3 ubiquitin protein ligase homolog (Drosophila).
    
 0.950
ercc8
Excision repair cross-complementation group 8.
    
 0.930
LOC108229807
Cullin 4A; Belongs to the cullin family.
  
  
0.918
cops5
COP9 signalosome subunit 5.
    
 0.917
cops4
COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).
    
 0.908
rnf7
Ring finger protein 7.
    
 0.906
dcaf11
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
 0.901
ddb2
Damage-specific DNA binding protein 2.
    
 0.901
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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