STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sap18Histone deacetylase complex subunit SAP18; Involved in the tethering of the SIN3 complex to core histone proteins. (153 aa)    
Predicted Functional Partners:
rnps1
RNA binding protein S1, serine-rich domain.
   
 0.996
pnn
Pinin, desmosome associated protein.
    
 0.988
suds3
SDS3 homolog, SIN3A corepressor complex component.
     
 0.963
arid4b
Translocase of outer mitochondrial membrane 20.
   
 
 0.961
LOC108245921
Apoptotic chromatin condensation inducer 1b.
   
 0.961
arid4a
AT rich interactive domain 4A (RBP1-like).
   
 
 0.961
LOC108238627
SAP domain-containing protein.
   
 0.961
sap30l
Sap30-like.
     
 0.942
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.921
LOC108246661
Mago homolog, exon junction complex subunit.
   
 0.915
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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