STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btbd17BTB (POZ) domain containing 17a. (476 aa)    
Predicted Functional Partners:
bbs9
Bardet-Biedl syndrome 9.
    
 0.536
bbs7
Bardet-Biedl syndrome 7.
    
 0.495
ttc8
Tetratricopeptide repeat domain 8.
    
 0.488
mib2
Mindbomb E3 ubiquitin protein ligase 2.
    
 0.476
ttc13
Tetratricopeptide repeat domain 13.
    
 0.456
ubxn7
UBX domain protein 7.
    
  0.437
lrrcc1
Leucine rich repeat and coiled-coil centrosomal protein 1.
     
 0.417
nbr1
NBR1 autophagy cargo receptor a.
    
 0.403
LOC108245360
NBR1 autophagy cargo receptor b.
    
 0.403
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.