STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nol7Nucleolar protein 7. (226 aa)    
Predicted Functional Partners:
utp4
UTP4 small subunit processome component.
    
   0.858
wdr43
WD repeat domain 43.
    
   0.847
wdr75
WD repeat domain 75.
    
   0.827
utp15
UTP15 small subunit processome component.
    
   0.813
nol11
Nucleolar protein 11.
    
   0.813
fcf1
FCF1 rRNA-processing protein.
   
 
 0.739
mphosph6
M-phase phosphoprotein 6.
   
  
 0.681
rfwd3
Ring finger and WD repeat domain 3.
      
 0.679
LOC108244221
Carboxypeptidase A4.
      
 0.679
nop9
PUM-HD domain-containing protein.
      
 0.679
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.