STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ca7Carbonic anhydrase VII; Belongs to the alpha-carbonic anhydrase family. (262 aa)    
Predicted Functional Partners:
heatr3
HEAT repeat containing 3.
 
    
 0.675
rtn4ip1
Reticulon 4 interacting protein 1.
   
  
 0.669
LOC108244452
Neurexophilin; May be signaling molecules that resemble neuropeptides.
   
  
 0.635
ccar1
Cell division cycle and apoptosis regulator 1.
      
 0.634
rpf2
Ribosome production factor 2 homolog.
   
 
 0.607
brd7
Bromodomain containing 7.
   
  
 0.580
ca10
Carbonic anhydrase Xa; Belongs to the alpha-carbonic anhydrase family.
  
   
0.543
LOC108228698
Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.
  
  
0.528
LOC108230237
Alpha-carbonic anhydrase domain-containing protein; Belongs to the alpha-carbonic anhydrase family.
  
  
0.525
Rrs1
Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family.
   
 
 0.516
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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