stam protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

stam

Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (521 aa)

Predicted Functional Partners:

hgs

0.999

stam2

0.986

rps27a

0.955

Itsn2

0.937

ENSKMAP00000015043

0.937

ENSKMAP00000015068

0.937

ENSKMAP00000015114

0.937

ubb

0.937

ENSKMAP00000026757

0.937

ENSKMAP00000026786

0.937

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSKMAP00000015043	ENSKMAP00000015068	ENSKMAP00000015043	ENSKMAP00000015068	SH3 domain-containing protein.	EF-hand domain-containing protein.	0.941
ENSKMAP00000015043	ENSKMAP00000015114	ENSKMAP00000015043	ENSKMAP00000015114	SH3 domain-containing protein.	Uncharacterized protein.	0.941
ENSKMAP00000015043	ENSKMAP00000026757	ENSKMAP00000015043	ENSKMAP00000026757	SH3 domain-containing protein.	Uncharacterized protein.	0.941
ENSKMAP00000015043	ENSKMAP00000026786	ENSKMAP00000015043	ENSKMAP00000026786	SH3 domain-containing protein.	Uncharacterized protein.	0.941
ENSKMAP00000015043	Itsn2	ENSKMAP00000015043	ENSKMAP00000015015	SH3 domain-containing protein.	Uncharacterized protein.	0.941
ENSKMAP00000015043	hgs	ENSKMAP00000015043	ENSKMAP00000017337	SH3 domain-containing protein.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.937
ENSKMAP00000015043	rps27a	ENSKMAP00000015043	ENSKMAP00000004139	SH3 domain-containing protein.	Ribosomal protein S27a.	0.532
ENSKMAP00000015043	stam	ENSKMAP00000015043	ENSKMAP00000001196	SH3 domain-containing protein.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.	0.937
ENSKMAP00000015043	stam2	ENSKMAP00000015043	ENSKMAP00000007625	SH3 domain-containing protein.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.	0.937
ENSKMAP00000015043	ubb	ENSKMAP00000015043	ENSKMAP00000016559	SH3 domain-containing protein.	Uncharacterized protein.	0.528
ENSKMAP00000015068	ENSKMAP00000015043	ENSKMAP00000015068	ENSKMAP00000015043	EF-hand domain-containing protein.	SH3 domain-containing protein.	0.941
ENSKMAP00000015068	ENSKMAP00000015114	ENSKMAP00000015068	ENSKMAP00000015114	EF-hand domain-containing protein.	Uncharacterized protein.	0.953
ENSKMAP00000015068	ENSKMAP00000026757	ENSKMAP00000015068	ENSKMAP00000026757	EF-hand domain-containing protein.	Uncharacterized protein.	0.968
ENSKMAP00000015068	ENSKMAP00000026786	ENSKMAP00000015068	ENSKMAP00000026786	EF-hand domain-containing protein.	Uncharacterized protein.	0.941
ENSKMAP00000015068	Itsn2	ENSKMAP00000015068	ENSKMAP00000015015	EF-hand domain-containing protein.	Uncharacterized protein.	0.964
ENSKMAP00000015068	hgs	ENSKMAP00000015068	ENSKMAP00000017337	EF-hand domain-containing protein.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.937
ENSKMAP00000015068	rps27a	ENSKMAP00000015068	ENSKMAP00000004139	EF-hand domain-containing protein.	Ribosomal protein S27a.	0.532
ENSKMAP00000015068	stam	ENSKMAP00000015068	ENSKMAP00000001196	EF-hand domain-containing protein.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1.	0.937
ENSKMAP00000015068	stam2	ENSKMAP00000015068	ENSKMAP00000007625	EF-hand domain-containing protein.	Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2.	0.937
ENSKMAP00000015068	ubb	ENSKMAP00000015068	ENSKMAP00000016559	EF-hand domain-containing protein.	Uncharacterized protein.	0.528