STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108234752Cholinergic receptor, nicotinic, alpha 7 (neuronal). (508 aa)    
Predicted Functional Partners:
PRKAB2
Protein kinase AMP-activated non-catalytic subunit beta 2.
      
 0.564
chrna1
Cholinergic receptor, nicotinic, alpha 1 (muscle).
   
0.527
ENSKMAP00000008661
Cholinergic receptor, nicotinic, alpha 4b.
  
0.517
chrna2
Cholinergic receptor, nicotinic, alpha 2b (neuronal).
  
0.516
LOC108243086
Cholinergic receptor, nicotinic, beta 3b (neuronal).
  
0.457
chrna5
Cholinergic receptor, nicotinic, alpha 5.
  
0.457
LOC108236400
Cholinergic receptor, nicotinic, beta polypeptide 3a.
   
0.442
chrna9
Cholinergic receptor, nicotinic, alpha 9.
   
0.441
LOC108235984
Uncharacterized protein.
   
0.441
LOC108251772
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
0.441
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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