STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108243349LSM14A mRNA processing body assembly factor b. (451 aa)    
Predicted Functional Partners:
EIF4ENIF1
Eukaryotic translation initiation factor 4E nuclear import factor 1.
   
 
 0.864
ddx6
DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.821
LOC108229619
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 
 0.821
ENSKMAP00000021613
Decapping mRNA 2.
   
 
 0.723
LOC108229852
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
    
 
 0.670
LOC108243345
Uncharacterized protein.
    
 
 0.670
dcp1a
Decapping mRNA 1A.
    
 
 0.633
LOC108235126
Decapping mRNA 1B.
    
 
 0.629
edc4
Enhancer of mRNA decapping 4.
    
 
 0.590
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 
 0.504
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.