STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mitd1MIT, microtubule interacting and transport, domain containing 1. (246 aa)    
Predicted Functional Partners:
LOC108247440
Chromatin modifying protein 1B.
    
 
 0.705
LOC108237992
Uncharacterized protein.
    
 
 0.705
chmp1a
Charged multivesicular body protein 1A.
    
 
 0.705
tmem121
Transmembrane protein 121Ab.
      
 0.652
LOC108236201
Peptidoglycan recognition protein 6.
      
 0.645
chmp2a
Charged multivesicular body protein 2A.
    
 
 0.643
akap17a
A kinase (PRKA) anchor protein 17A.
      
 0.642
txndc9
Thioredoxin domain containing 9.
   
  
 0.573
ids
Iduronate 2-sulfatase.
      
 0.571
mrpl30
Mitochondrial ribosomal protein L30.
      
 0.569
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.