STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itgb8Integrin beta. (409 aa)    
Predicted Functional Partners:
LOC108238902
Vitronectin b.
    
 0.969
LOC108246043
Vitronectin a.
    
 0.969
itgav
Integrin, alpha V; Belongs to the integrin alpha chain family.
    
 0.964
LOC108228916
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.938
LOC108238549
Fibronectin 1a.
   
 
 0.922
LOC108237634
Tyrosine-protein kinase.
    
 0.921
SRC
Tyrosine-protein kinase.
    
 0.921
tln1
Talin 1.
   
 0.916
ENSKMAP00000015646
Fibronectin type-III domain-containing protein.
   
 
  0.903
LOC108237631
Integrin, alpha 5 (fibronectin receptor, alpha polypeptide); Belongs to the integrin alpha chain family.
    
 0.887
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.