STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ltbp2Uncharacterized protein. (1700 aa)    
Predicted Functional Partners:
LOC108228916
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.792
LOC108231423
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.686
pard3
Par-3 family cell polarity regulator alpha, b.
    
 
 0.648
srbd1
S1 RNA binding domain 1.
   
 
 0.641
tgfb3
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.587
LOC108242427
Transforming growth factor beta; Belongs to the TGF-beta family.
   
 0.587
itgb6
Integrin beta; Belongs to the integrin beta chain family.
    
 0.582
palld
Palladin, cytoskeletal associated protein.
    
 0.522
fkbp10
Peptidylprolyl isomerase.
   
 0.514
ptgis
Cytochrome p450 CYP8A1; Belongs to the cytochrome P450 family.
   
 0.503
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.