STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
setd3Protein-histidine N-methyltransferase. (659 aa)    
Predicted Functional Partners:
nsd3
Nuclear receptor binding SET domain protein 3.
     
 0.662
LOC108244389
SET domain and mariner transposase fusion gene.
     
 0.662
bccip
Protein BCCIP homolog; Belongs to the BCP1 family.
   
 
 0.651
yars1
Tyrosine--tRNA ligase.
    
 
 0.599
mmaa
Metabolism of cobalamin associated A.
    
 0.597
mindy2
MINDY lysine 48 deubiquitinase 2.
    
 0.597
mindy1
MINDY lysine 48 deubiquitinase 1.
    
 0.597
setd2
SET domain containing 2, histone lysine methyltransferase.
     
 0.596
setd4
SET domain containing 4.
      
0.585
LOC108229634
SOCS box domain-containing protein.
   
    0.575
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.