bag6 protein (Kryptolebias marmoratus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

bag6

BCL2 associated athanogene 6. (1215 aa)

Predicted Functional Partners:

get4

0.981

ubl4a

0.961

ubxn1

0.952

faf2

0.944

LOC108230570

0.889

LOC108239446

0.889

get3

0.873

sgta

0.837

LOC108246199

0.826

LOC108236087

0.826

Your Current Organism:

Kryptolebias marmoratus

NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC108230570	bag6	ENSKMAP00000006117	ENSKMAP00000003243	RING-type domain-containing protein.	BCL2 associated athanogene 6.	0.889
LOC108230570	get3	ENSKMAP00000006117	ENSKMAP00000029403	RING-type domain-containing protein.	ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]	0.458
LOC108230570	get4	ENSKMAP00000006117	ENSKMAP00000002579	RING-type domain-containing protein.	Guided entry of tail-anchored proteins factor 4.	0.680
LOC108230570	ubl4a	ENSKMAP00000006117	ENSKMAP00000008275	RING-type domain-containing protein.	Ubiquitin like 4A.	0.461
LOC108236087	bag6	ENSKMAP00000022870	ENSKMAP00000003243	Desumoylating isopeptidase 1a.	BCL2 associated athanogene 6.	0.826
LOC108239446	bag6	ENSKMAP00000008147	ENSKMAP00000003243	Ring finger protein 126.	BCL2 associated athanogene 6.	0.889
LOC108239446	get3	ENSKMAP00000008147	ENSKMAP00000029403	Ring finger protein 126.	ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]	0.458
LOC108239446	get4	ENSKMAP00000008147	ENSKMAP00000002579	Ring finger protein 126.	Guided entry of tail-anchored proteins factor 4.	0.680
LOC108239446	ubl4a	ENSKMAP00000008147	ENSKMAP00000008275	Ring finger protein 126.	Ubiquitin like 4A.	0.461
LOC108246199	bag6	ENSKMAP00000002745	ENSKMAP00000003243	Desumoylating isopeptidase 1b.	BCL2 associated athanogene 6.	0.826
bag6	LOC108230570	ENSKMAP00000003243	ENSKMAP00000006117	BCL2 associated athanogene 6.	RING-type domain-containing protein.	0.889
bag6	LOC108236087	ENSKMAP00000003243	ENSKMAP00000022870	BCL2 associated athanogene 6.	Desumoylating isopeptidase 1a.	0.826
bag6	LOC108239446	ENSKMAP00000003243	ENSKMAP00000008147	BCL2 associated athanogene 6.	Ring finger protein 126.	0.889
bag6	LOC108246199	ENSKMAP00000003243	ENSKMAP00000002745	BCL2 associated athanogene 6.	Desumoylating isopeptidase 1b.	0.826
bag6	faf2	ENSKMAP00000003243	ENSKMAP00000011704	BCL2 associated athanogene 6.	Fas associated factor family member 2.	0.944
bag6	get3	ENSKMAP00000003243	ENSKMAP00000029403	BCL2 associated athanogene 6.	ATPase ASNA1; ATPase required for the post-translational delivery of tail- anchored (TA) proteins to the endoplasmic reticulum. Recognizes and selectively binds the transmembrane domain of TA proteins in the cytosol. This complex then targets to the endoplasmic reticulum by membrane-bound receptors, where the tail-anchored protein is released for insertion. This process is regulated by ATP binding and hydrolysis. ATP binding drives the homodimer towards the closed dimer state, facilitating recognition of newly synthesized TA membrane proteins. ATP hydrolysis is required for insertion. [...]	0.873
bag6	get4	ENSKMAP00000003243	ENSKMAP00000002579	BCL2 associated athanogene 6.	Guided entry of tail-anchored proteins factor 4.	0.981
bag6	sgta	ENSKMAP00000003243	ENSKMAP00000014631	BCL2 associated athanogene 6.	Small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha.	0.837
bag6	ubl4a	ENSKMAP00000003243	ENSKMAP00000008275	BCL2 associated athanogene 6.	Ubiquitin like 4A.	0.961
bag6	ubxn1	ENSKMAP00000003243	ENSKMAP00000006234	BCL2 associated athanogene 6.	UBX domain protein 1.	0.952