STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
baz1bBromodomain adjacent to zinc finger domain, 1B. (1588 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.991
Mybbp1a
Uncharacterized protein.
    
 0.896
LOC108250610
DEK proto-oncogene.
    
 0.879
ddx21
DEAD (Asp-Glu-Ala-Asp) box helicase 21.
   
 
 0.873
sf3b1
Splicing factor 3b, subunit 1.
   
 0.870
ercc6
Excision repair cross-complementation group 6.
    
 0.793
chd1l
Chromodomain helicase DNA binding protein 1-like.
    
 0.756
polr1e
RNA polymerase I subunit E.
    
 0.744
hells
Helicase, lymphoid specific.
    
 0.735
pole3
CBFD_NFYB_HMF domain-containing protein.
    
 
 0.698
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.