STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arih2RBR-type E3 ubiquitin transferase. (508 aa)    
Predicted Functional Partners:
rnf7
Ring finger protein 7.
    
 
 0.896
CUL5
Cullin 5; Belongs to the cullin family.
    
 
 0.889
LOC108248946
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 
 0.889
LOC108238649
NEDD8 ubiquitin like modifier.
   
 0.838
LOC108245932
NEDD8 ubiquitin like modifier.
   
 0.753
LOC108245383
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.691
rps27a
Ribosomal protein S27a.
   
 0.687
LOC108230271
OTU deubiquitinase with linear linkage specificity a.
    
 0.686
pex11b
Peroxisomal biogenesis factor 11 beta.
      
 0.679
tmem183a
Transmembrane protein 183A.
      
 0.679
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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