STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108230541Collagen beta(1-O)galactosyltransferase 2. (615 aa)    
Predicted Functional Partners:
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
0.955
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
   
0.955
ogfod2
2-oxoglutarate and iron-dependent oxygenase domain containing 2.
   
 0.492
ENSKMAP00000004585
Si:ch211-243o19.4.
      
 0.489
ENSKMAP00000016048
Uncharacterized protein.
   
 0.439
LOC108238628
Collagen, type VI, alpha 2.
   
 0.439
ENSKMAP00000026699
Uncharacterized protein.
    
 0.407
col17a1
Uncharacterized protein.
    
 0.407
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.