STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108237606TNFR-Cys domain-containing protein. (301 aa)    
Predicted Functional Partners:
LOC108231281
CD40 ligand; Belongs to the tumor necrosis factor family.
   
 0.976
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.942
ENSKMAP00000001618
zf-C3HC4 domain-containing protein.
   
 0.894
LOC108249386
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.894
LOC108245125
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.800
LOC108244062
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.761
LOC108249884
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.761
LOC108230862
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.761
tnfsf13b
TNF superfamily member 13b; Belongs to the tumor necrosis factor family.
   
 0.724
aicda
Activation-induced cytidine deaminase.
   
  
 0.669
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.