STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108238146Matrix metallopeptidase 13b. (458 aa)    
Predicted Functional Partners:
timp2
TIMP metallopeptidase inhibitor 2a.
   
 0.638
LOC108241333
TIMP metallopeptidase inhibitor 2b.
   
 0.638
cfp
Uncharacterized protein.
     
 0.638
TIMP3
TIMP metallopeptidase inhibitor 3.
   
 0.626
LOC108245665
Collagen, type X, alpha 1b.
   
 0.603
LOC108243181
Cathepsin K; Belongs to the peptidase C1 family.
   
 
 0.602
LOC108236977
Collagen, type X, alpha 1a.
   
 0.561
LOC108244785
Macrophage expressed 1, tandem duplicate 2.
      
 0.529
atp6v1h
V-type proton ATPase subunit H; Subunit of the peripheral V1 complex of vacuolar ATPase. Subunit H activates ATPase activity of the enzyme and couples ATPase activity to proton flow. Vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells, thus providing most of the energy required for transport processes in the vacuolar system.
   
  
 0.519
mmp14
Matrix metallopeptidase 14b (membrane-inserted).
  
0.519
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.