STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108229396Cytochrome P450, family 7, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (615 aa)    
Predicted Functional Partners:
ch25h
Cholesterol 25-hydroxylase; Belongs to the sterol desaturase family.
   
 0.795
hsd3b7
Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase.
   
 0.759
hsd3b1
Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1; Belongs to the 3-beta-HSD family.
   
 0.759
LOC108247360
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 0.756
LOC108247361
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 0.756
sqle
Squalene epoxidase a.
  
 0.753
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
  
 
 0.747
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.734
sigmar1
Sigma non-opioid intracellular receptor 1.
   
 
 0.725
sdr42e1
Short chain dehydrogenase/reductase family 42E, member 1; Belongs to the 3-beta-HSD family.
   
 0.707
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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