STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsd3Nuclear receptor binding SET domain protein 3. (1624 aa)    
Predicted Functional Partners:
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
    
 0.684
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
    
 0.684
camkmt
Calmodulin-lysine N-methyltransferase.
     
 0.677
ash2l
Ash2 like, histone lysine methyltransferase complex subunit.
    
 0.666
rbbp5
Retinoblastoma binding protein 5.
    
 0.664
setd3
Protein-histidine N-methyltransferase.
     
 0.662
eed
Embryonic ectoderm development.
   
 0.657
setd7
SET domain containing 7, histone lysine methyltransferase.
   
 0.633
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.599
LOC108240031
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.580
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.