STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108237008FAT atypical cadherin 3b. (4383 aa)    
Predicted Functional Partners:
fjx1
Four-jointed box kinase 1.
   
 
 0.659
LIX1L
Limb and CNS expressed 1 like.
   
 0.645
lix1
Limb and CNS expressed 1.
   
 0.632
LOC108235377
Atrophin 1.
    
 0.537
LOC108231352
Arginine-glutamic acid dipeptide (RE) repeats b.
    
 0.537
rere
Arginine-glutamic acid dipeptide (RE) repeats a.
    
 0.537
fat3
FAT atypical cadherin 3a.
  
 
0.477
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.