STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1r10Protein phosphatase 1, regulatory subunit 10. (802 aa)    
Predicted Functional Partners:
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.912
sf3a1
Splicing factor 3a, subunit 1.
   
 0.905
sf3a3
Splicing factor 3a, subunit 3.
   
 0.895
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 
 0.883
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
 0.868
ENSKMAP00000008119
RRM domain-containing protein.
   
 
 0.868
sf3b1
Splicing factor 3b, subunit 1.
   
 0.821
htatsf1
HIV-1 Tat specific factor 1.
     
 0.740
sf3a2
Splicing factor 3a, subunit 2.
   
 0.733
ENSKMAP00000013992
annotation not available
   
 0.733
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.