STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC108246773IF rod domain-containing protein; Belongs to the intermediate filament family. (351 aa)    
Predicted Functional Partners:
LOC108249566
Ubiquitin-conjugating enzyme E2 variant 1.
   
 0.767
ENSKMAP00000029729
TMEM189_B_dmain domain-containing protein.
   
 0.767
bag3
BCL2 associated athanogene 3.
    
 0.597
rps27a
Ribosomal protein S27a.
    
  0.512
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.494
hsp90b1
Heat shock protein 90, beta (grp94), member 1.
    
 0.470
birc6
Baculoviral IAP repeat containing 6.
   
 0.456
trip12
Thyroid hormone receptor interactor 12.
     
 0.455
ENSKMAP00000008344
Uncharacterized protein.
    
 0.445
trap1
TNF receptor-associated protein 1.
    
 0.445
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.