STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sorcs2Sortilin-related VPS10 domain containing receptor 2. (1130 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
     
 0.931
dnajc6
DnaJ (Hsp40) homolog, subfamily C, member 6.
     
 0.579
ENSKMAP00000027218
Nerve growth factor a (beta polypeptide); Belongs to the NGF-beta family.
    
 
 0.524
igf2r
Insulin-like growth factor 2 receptor.
    
 0.512
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
 
 0.511
psma4
Proteasome subunit alpha type.
    
   0.474
psma1
Proteasome subunit alpha type.
    
   0.474
psma8
Proteasome subunit alpha type.
    
   0.474
psmb1
Proteasome subunit beta.
    
   0.474
LOC108238160
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.446
Your Current Organism:
Kryptolebias marmoratus
NCBI taxonomy Id: 37003
Other names: K. marmoratus, Rivulus marmoratus, mangrove rivulus, matanzas rivulus
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